Markus Stocker bio photo

Markus Stocker

Between information technology and environmental science with a flair for economics, the clarinet, and the world of soups and salads.

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Publications

Overview

Publication list (45) organized into the categories journals (11), proceedings (19), book chapters (1), technical reports (7), abstracts (3), dissertations (3), and in review (1).

Journals

Michael Diepenbroek, Uwe Schindler, Robert Huber, Stephane Pesant, Markus Stocker, Janine Felden, Melanie Buss, and Mathias Weinrebe (2017). Terminology Supported Archiving and Publication of Environmental Science Data in PANGAEA. Journal of Biotechnology, 261:177-186. https://doi.org/10.1016/j.jbiotec.2017.07.016

Patrik Krebs, Gianni Boris Pezzatti, Markus Stocker, Matthias Bürgi, and Marco Conedera (2017). The selection of suitable sites for traditional charcoal production: ideas and practice in southern Switzerland. Journal of Historical Geography, 57:1-16. https://doi.org/10.1016/j.jhg.2017.04.002

Markus Stocker (2017). From Data to Machine Readable Information Aggregated in Research Objects. D-Lib Magazine, 23(1/2). https://doi.org/10.1045/january2017-stocker

Adrian Burton, Hylke Koers, Paolo Manghi, Markus Stocker, Martin Fenner, Amir Aryani, Sandro La Bruzzo, Michael Diepenbroek, and Uwe Schindler (2017). The Scholix Framework for Interoperability in Data-Literature Information Exchange. D-Lib Magazine, 23(1/2). https://doi.org/10.1045/january2017-burton

Markus Stocker, Jussi Nikander, Hanna Huitu, Marja Jalli, Markku Koistinen, Mauno Rönkkö, and Mikko Kolehmainen (2016). Representing Situational Knowledge for Disease Outbreaks in Agriculture. Journal of Agricultural Informatics, 7(2):29-39. https://doi.org/10.17700/jai.2016.7.2.290
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Markus Stocker, Mauno Rönkkö, and Mikko Kolehmainen (2016). Knowledge-based environmental research infrastructure: moving beyond data. Earth Science Informatics, 9(1):47-65. https://doi.org/10.1007/s12145-015-0230-6
Nominated in 2017 Springer Nature “Change the World, One Article at a Time” initiative, subject Earth and Environmental Sciences.

Markus Stocker, Paula Silvonen, Mauno Rönkkö, and Mikko Kolehmainen (2016). Detection and classification of vehicles by measurement of road-pavement vibration and by means of supervised machine learning. Journal of Intelligent Transportation Systems, 20(2):125-137. https://doi.org/10.1080/15472450.2015.1004063

Marina Riga, Markus Stocker, Mauno Rönkkö, Kostas Karatzas, and Mikko Kolehmainen (2015). Atmospheric Environment and Quality of Life Information Extraction from Twitter with the Use of Self-Organizing Maps. Journal of Environmental Informatics, 26(1):27-40. https://doi.org/10.3808/jei.201500311

Patrik Krebs, Markus Stocker, Gianni Boris Pezzatti, and Marco Conedera (2015). An alternative approach to transverse and profile terrain curvature. International Journal of Geographical Information Science, 29(4):643-666. https://doi.org/10.1080/13658816.2014.995102

Markus Stocker, Elham Baranizadeh, Harri Portin, Mika Komppula, Mauno Rönkkö, Amar Hamed, Annele Virtanen, Kari Lehtinen, Ari Laaksonen, and Mikko Kolehmainen (2014). Representing situational knowledge acquired from sensor data for atmospheric phenomena. Environmental Modelling & Software, 58:27-47. https://doi.org/10.1016/j.envsoft.2014.04.006

Markus Stocker, Mauno Rönkkö, and Mikko Kolehmainen (2014). Situational Knowledge Representation for Traffic Observed by a Pavement Vibration Sensor Network. IEEE Transactions on Intelligent Transportation Systems, 15(4):1441-1450. https://doi.org/10.1109/TITS.2013.2296697

Proceedings

Markus Stocker, Narasinha Shurpali, Kerry Taylor, George Burba, Mauno Rönkkö, and Mikko Kolehmainen (2015). Emrooz: A Scalable Database for SSN Observations. In Proceedings of the 1st Joint International Workshop on Semantic Sensor Networks and Terra Cognita and the 4th International Workshop on Ordering and Reasoning co-located with the 14th International Semantic Web Conference, volume 1488, pp. 1-12, Bethlehem, PA, USA, October 11. CEUR-WS.
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Markus Stocker, Mauno Rönkkö, and Mikko Kolehmainen (2015). Provenance in Systems for Situation Awareness in Environmental Monitoring. Environmental Software Systems. Infrastructures, Services and Applications, IFIP Advances in Information and Communication Technology 448, pp. 169-177. https://doi.org/10.1007/978-3-319-15994-2_16
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Markus Stocker, Okko Kauhanen, Mikko Hiirsalmi, Janne Saarela, Pekka Rossi, Mauno Rönkkö, Harri Hytönen, Ville Kotovirta, and Mikko Kolehmainen (2015). A Software System for the Discovery of Situations Involving Drivers in Storms. Environmental Software Systems. Infrastructures, Services and Applications, IFIP Advances in Information and Communication Technology 448, pp. 226-234. https://doi.org/10.1007/978-3-319-15994-2_22
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Mauno Rönkkö, Okko Kauhanen, Markus Stocker, Harri Hytönen, Ville Kotovirta, Esko Juuso, and Mikko Kolehmainen (2015). Quality Control of Environmental Measurement Data with Quality Flagging. Environmental Software Systems. Infrastructures, Services and Applications, IFIP Advances in Information and Communication Technology 448, pp. 343-350. https://doi.org/10.1007/978-3-319-15994-2_34
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Markus Stocker, Mauno Rönkkö, and Mikko Kolehmainen (2014). Towards an Ontology for Situation Assessment in Environmental Monitoring. In Proceedings of the 7th International Congress on Environmental Modelling and Software, pp. 1281-1288, San Diego, CA, USA, June 15-19. ISBN: 978-88-9035-744-2
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Mats Neovius, Markus Stocker, Mauno Rönkkö, and Luigia Petre (2014). Trustworthiness Modelling on Continuous Environmental Measurement. In Proceedings of the 7th International Congress on Environmental Modelling and Software, pp. 955-962, San Diego, CA, USA, June 15-19. ISBN: 978-88-9035-744-2
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Markus Stocker, Mauno Rönkkö, and Mikko Kolehmainen (2014). Abstractions from Sensor Data with Complex Event Processing and Machine Learning. In Proceedings of the 7th International Congress on Environmental Modelling and Software, pp. 1273-1280, San Diego, CA, USA, June 15-19. ISBN: 978-88-9035-744-2
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Mauno Rönkkö, Markus Stocker, Mats Neovius, Luigia Petre, and Mikko Kolehmainen (2014). Designing Resilience Mediators for Control Systems. In Proceedings of the IASTED International Conference on Modelling, Identification, and Control, pp. 147-154, Innsbruck, Austria, February 17-19. https://doi.org/10.2316/P.2014.809-012

Markus Stocker, Elham Baranizadeh, Amar Hamed, Mauno Rönkkö, Annele Virtanen, Ari Laaksonen, Harri Portin, Mika Komppula, and Mikko Kolehmainen (2013). Acquisition and Representation of Knowledge for Atmospheric New Particle Formation. Environmental Software Systems. Fostering Information Sharing, IFIP Advances in Information and Communication Technology 413, pp. 98-108. https://doi.org/10.1007/978-3-642-41151-9_10
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Mauno Rönkkö, Markus Stocker, Markku Huttunen, Ville Kotovirta, and Mikko Kolehmainen (2013). TiTiMaKe: A Distributed Service Architecture for Security Applications. Environmental Software Systems. Fostering Information Sharing, IFIP Advances in Information and Communication Technology 413, pp. 381-390. https://doi.org/10.1007/978-3-642-41151-9_36
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Markus Stocker, Mauno Rönkkö, and Mikko Kolehmainen (2012). Making Sense of Sensor Data Using Ontology: A Discussion for Road Vehicle Classification. In Proceedings of the 6th International Congress on Environmental Modelling and Software, pp. 2387-2394, Leipzig, Germany, July 1-5.
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Mauno Rönkkö, Ville Kotovirta, Kostas Karatzas, Lucy Bastin, Markus Stocker, and Mikko Kolehmainen (2012). Proactive Environmental Systems: the Next Generation of Environmental Monitoring. In Proceedings of the 6th International Congress on Environmental Modelling and Software, pp. 1-8, Leipzig, Germany, July 1-5.
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Markus Stocker, Mauno Rönkkö, and Mikko Kolehmainen (2012). Making Sense of Sensor Data Using Ontology: A Discussion for Residential Building Monitoring. Artificial Intelligence Applications and Innovations. IFIP Advances in Information and Communication Technology 382, pp. 341-350. https://doi.org/10.1007/978-3-642-33412-2_35
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Markus Stocker, Mauno Rönkkö, Ferdinando Villa, and Mikko Kolehmainen (2011). The Relevance of Measurement Data in Environmental Ontology Learning. Environmental Software Systems. Frameworks of eEnvironment, IFIP Advances in Information and Communication Technology 359, pp. 445-453. https://doi.org/10.1007/978-3-642-22285-6_48
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Markus Stocker and Evren Sirin (2009). PelletSpatial: A Hybrid RCC-8 and RDF/OWL Reasoning and Query Engine. In Proceedings of the 5th International OWLED Workshop, Chantilly, Virginia, USA, October 23-24.
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Markus Stocker and Michael Smith (2008). Owlgres: A Scalable OWL Reasoner. In Proceedings of the 4th International OWLED Workshop, Karlsruhe, Germany, October 26-27.
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Markus Stocker, Andy Seaborne, Abraham Bernstein, Christoph Kiefer, and Dave Reynolds (2008). SPARQL Basic Graph Pattern Optimization Using Selectivity Estimation. In Proceedings of the 17th International World Wide Web Conference, pp. 595-604, Beijing, China, April 21-25. https://doi.org/10.1145/1367497.1367578
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Christoph Kiefer, Abraham Bernstein, and Markus Stocker (2007). The Fundamentals of iSPARQL: A Virtual Triple Approach For Similarity-Based Semantic Web Tasks. In Proceedings of the 6th International Semantic Web Conference, pp. 295-309, Busan, Korea, November 11-15. https://doi.org/10.1007/978-3-540-76298-0_22
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Christoph Kiefer, Abraham Bernstein, Hong Joo Lee, Mark Klein, and Markus Stocker (2007). Semantic Process Retrieval with iSPARQL. In Proceedings of the 4th European Semantic Web Conference, pp. 609-623, Innsbruck, Austria, June 3-7. https://doi.org/10.1007/978-3-540-72667-8_43
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Book Chapters

Markus Stocker (2017). Advancing the Software Systems of Environmental Knowledge Infrastructures. In Abad Chabbi and Henry W. Loescher (Eds.), Terrestrial Ecosystem Research Infrastructures: Challenges and Opportunities, pp. 399–423. Taylor & Francis Group, CRC Press. ISBN: 9781498751315 https://doi.org/10.1201/9781315368252-16

Technical Reports

Guilherme de Mello, Markus Stocker, Angela Dappert, Robin Dasler, Tom Demeranville, Kristian Garza, Florian Graef, Johanna McEntyre, Uwe Schindler (2017). Services that Enable Integration and Cross-Linking Across Different Types of Identifiers and Data Types. Zenodo. https://doi.org/10.5281/zenodo.890959
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Guilherme de Mello, Florian Graef, Markus Stocker, Uwe Schindler, Robin Dasler, Johanna McEntyre, Kristian Garza, and Sünje Dallmeier-Tiessen (2017). Services that Support Claiming of Datasets in Multiple Workflows. Zenodo. https://doi.org/10.5281/zenodo.290649
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Guilherme de Mello, Florian Graef, Markus Stocker, Uwe Schindler, Robin Dasler, Johanna McEntyre, and Sünje Dallmeier-Tiessen (2016). Demonstration of Services to Integrate ORCIDs into Data Records and Database Systems. Zenodo. https://doi.org/10.5281/zenodo.58971
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Mauno Rönkkö, Markus Stocker, Mats Neovius, Mikko Kolehmainen, and Luigia Petre (2013). Programming by Construction. Technical report 1092, Turku Center for Computer Science.
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Abraham Bernstein, Markus Stocker, and Christoph Kiefer (2007). SPARQL Query Optimization Using Selectivity Estimation. Poster of the 6th International Semantic Web Conference, Busan, Korea, November 11-15.
Abstract | Poster

Markus Stocker and Andy Seaborne (2007). ARQo: The Architecture for an ARQ Static Query Optimizer. Technical report HPL-2007-92, HP Laboratories Bristol.
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Abraham Bernstein, Christoph Kiefer, and Markus Stocker (2007). OptARQ: A SPARQL Optimization Approach based on Triple Pattern Selectivity Estimation. Technical report ifi-2007.03, Department of Informatics, University of Zurich.
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Abstracts

Markus Stocker, Stefano Nativi, and Jay Pearlman (2017). Machine actionable information about observed environments. Geophysical Research Abstracts, Vol. 19, EGU2017-14532, EGU General Assembly.
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Mustapha Mokrane, Adrian Burton, Hylke Koers, and Markus Stocker (2016). Persistent Identifiers: a Prerequisite to Establish the Framework for Scholarly Link Exchange-Scholix. Abstract IN41D-07 presented at 2016 Fall Meeting, American Geophysical Union, San Francisco, California, 12-16 December.
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Robert Huber, Michael Diepenbroek, Josh Brown, Tom Demeranville, and Markus Stocker (2016). THOR: Connecting People, Places, and Things. Geophysical Research Abstracts, Vol. 18, EGU2016-15330, EGU General Assembly.
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Dissertations

Markus Stocker (2017). Semantic Representation of Marine Monitoring Data. Masters Thesis. Faculty of Science and Forestry, Department of Environmental and Biological Sciences, University of Eastern Finland. http://urn.fi/urn:nbn:fi:uef-20170482
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Markus Stocker (2015). Situation Awareness in Environmental Monitoring. Doctoral Dissertation (PhD). Publications of the University of Eastern Finland. Dissertations in Forestry and Natural Sciences No 192, University of Eastern Finland. ISBN: 978-952-61-1907-6. http://urn.fi/URN:ISBN:978-952-61-1908-3
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Markus Stocker (2006). The Fundamentals of iSPARQL. Diploma Thesis (MSc). Department of Informatics, University of Zurich.
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In Review

Markus Stocker and Alex Hardisty (2017). Recording Information Acquired by Interpreting Observational Data of Environmental Research Infrastructures.